4U03 Structure of the vibrio cholerae di-nucleotide cyclase (DncV) in complex with GTP and 5MTHFGLU2 date
authors Zhu, D.Y., Xiang, Y.
compound source
symmetry
R_factor
R_Free 0.2333
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
ligand GTP, MG, TLL enzyme
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Biochemistry of a Vibrio cholerae Dinucleotide Cyclase Reveals Cyclase Activity Regulation by Folates., Zhu D, Wang L, Shang G, Liu X, Zhu J, Lu D, Wang L, Kan B, Zhang JR, Xiang Y, Mol Cell. 2014 Sep 18;55(6):931-7. doi: 10.1016/j.molcel.2014.08.001. Epub 2014, Sep 4. PMID:25201413
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (4u03.pdb1.gz) 140 Kb
  • Biological Unit Coordinates (4u03.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4U03
  • CSU: Contacts of Structural Units for 4U03
  • Structure Factors (451 Kb)
  • Retrieve 4U03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U03 from S2C, [Save to disk]
  • Re-refined 4u03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U03
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U03, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u03_A] [4u03_B] [4u03]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4U03
  • Community annotation for 4U03 at PDBWiki (http://pdbwiki.org)

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