4U38 RNA duplex containing UU mispair date
authors Sheng, J., Larsen, A., Heuberger, B., Blain, J.C., Szostak, J.W.
compound source
symmetry
R_factor
R_Free 0.25198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
Primary referenceCrystal Structure Studies of RNA Duplexes Containing sU:A and sU:U Base Pairs., Sheng J, Larsen A, Heuberger BD, Blain JC, Szostak JW, J Am Chem Soc. 2014 Sep 16. PMID:25188906
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (4u38.pdb1.gz) 6 Kb
  • Biological Unit Coordinates (4u38.pdb2.gz) 6 Kb
  • Biological Unit Coordinates (4u38.pdb3.gz) 6 Kb
  • Biological Unit Coordinates (4u38.pdb4.gz) 6 Kb
  • CSU: Contacts of Structural Units for 4U38
  • Structure Factors (311 Kb)
  • Retrieve 4U38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U38 from S2C, [Save to disk]
  • Re-refined 4u38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U38
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U38, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u38_B] [4u38_D] [4u38_E] [4u38_F] [4u38_G] [4u38] [4u38_A] [4u38_H] [4u38_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U38
  • Community annotation for 4U38 at PDBWiki (http://pdbwiki.org)

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