4U3D LpxC from A.Aaeolicus in complex with 4-[[4-[2-[4-(morpholinomethyl)phenyl]ethynyl]phenoxy]methyl]tetrahydropyran-4-carbohydroxamic acid (compound 9) date
authors Olivier, N.B.
compound source
symmetry
R_factor
R_Free 0.1683
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand 3BX, CL, IMD, ZN enzyme
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, Structure, and SAR of Tetrahydropyran-Based LpxC Inhibitors., Murphy-Benenato KE, Olivier N, Choy A, Ross PL, Miller MD, Thresher J, Gao N, Hale MR, ACS Med Chem Lett. 2014 Sep 23;5(11):1213-1218. eCollection 2014 Nov 13. PMID:25408833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (4u3d.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 4U3D
  • CSU: Contacts of Structural Units for 4U3D
  • Structure Factors (2206 Kb)
  • Retrieve 4U3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U3D from S2C, [Save to disk]
  • Re-refined 4u3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U3D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U3D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u3d] [4u3d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U3D
  • Community annotation for 4U3D at PDBWiki (http://pdbwiki.org)

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