4U4C The molecular architecture of the TRAMP complex reveals the organization and interplay of its two catalytic activities date
authors Falk, S., Weir, J.R., Hentschel, J., Reichelt, P., Bonneau, F., Conti, E.
compound source
symmetry
R_factor
R_Free 0.2401
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand CL, EDO, PEG, PG4, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Molecular Architecture of the TRAMP Complex Reveals the Organization and Interplay of Its Two Catalytic Activities., Falk S, Weir JR, Hentschel J, Reichelt P, Bonneau F, Conti E, Mol Cell. 2014 Sep 18;55(6):856-67. doi: 10.1016/j.molcel.2014.07.020. Epub 2014 , Aug 28. PMID:25175027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk]
  • Biological Unit Coordinates (4u4c.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 4U4C
  • CSU: Contacts of Structural Units for 4U4C
  • Structure Factors (1756 Kb)
  • Retrieve 4U4C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U4C from S2C, [Save to disk]
  • Re-refined 4u4c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4U4C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4U4C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U4C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u4c_B] [4u4c_A] [4u4c]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4U4C: [DEXDc] [DSHCT] [HELICc ] by SMART
  • Other resources with information on 4U4C
  • Community annotation for 4U4C at PDBWiki (http://pdbwiki.org)

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