4U8T Crystal structure of YTH domain of Zygosaccharomyces rouxii MRB1 protein in complex with N6-Methyladenosine RNA date
authors Luo, S., Tong, L.
compound source
symmetry
R_factor
R_Free 0.2452
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand 6MZ, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceMolecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain., Luo S, Tong L, Proc Natl Acad Sci U S A. 2014 Sep 8. pii: 201412742. PMID:25201973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (178 Kb) [Save to disk]
  • Biological Unit Coordinates (4u8t.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4u8t.pdb2.gz) 30 Kb
  • Biological Unit Coordinates (4u8t.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (4u8t.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (4u8t.pdb5.gz) 31 Kb
  • Biological Unit Coordinates (4u8t.pdb6.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 4U8T
  • CSU: Contacts of Structural Units for 4U8T
  • Structure Factors (418 Kb)
  • Retrieve 4U8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4U8T from S2C, [Save to disk]
  • Re-refined 4u8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4U8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4U8T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4U8T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4u8t_T] [4u8t_R] [4u8t_E] [4u8t_A] [4u8t_S] [4u8t_F] [4u8t_P] [4u8t_Q] [4u8t] [4u8t_O] [4u8t_B] [4u8t_C] [4u8t_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4U8T
  • Community annotation for 4U8T at PDBWiki (http://pdbwiki.org)

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