4UAZ DNA polymerase beta reactant complex with a templating adenine and incoming 8-oxodGTP, 20 s date
authors Freudenthal, B.D., Wilson, S.H., Beard, W.A.
compound source
symmetry
R_factor
R_Free 0.2196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.88
ligand 8DG, 8OG, MG, PPV enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUncovering the polymerase-induced cytotoxicity of an oxidized nucleotide., Freudenthal BD, Beard WA, Perera L, Shock DD, Kim T, Schlick T, Wilson SH, Nature. 2014 Nov 17. doi: 10.1038/nature13886. PMID:25409153
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4uaz.pdb1.gz) 130 Kb
  • LPC: Ligand-Protein Contacts for 4UAZ
  • CSU: Contacts of Structural Units for 4UAZ
  • Structure Factors (408 Kb)
  • Retrieve 4UAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UAZ from S2C, [Save to disk]
  • Re-refined 4uaz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UAZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uaz_A] [4uaz] [4uaz_P] [4uaz_D] [4uaz_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UAZ: [HhH1] [POLXc ] by SMART
  • Other resources with information on 4UAZ
  • Community annotation for 4UAZ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science