OCA Atlas for 4UBU

4UBU

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

COA, GOL, OAS

enzyme

Gene

P425 ; RVBD

Gene
Ontology

Chain	Function	Process	Component
G, A, B, E, F, H, D, C

Primary reference

FadA5 a Thiolase from Mycobacterium tuberculosis: A Steroid-Binding Pocket Reveals the Potential for Drug Development against Tuberculosis., Schaefer CM, Lu R, Nesbitt NM, Schiebel J, Sampson NS, Kisker C, Structure. 2014 Dec 3. pii: S0969-2126(14)00355-4. doi:, 10.1016/j.str.2014.10.010. PMID:25482540

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (974 Kb) [Save to disk]

Biological Unit Coordinates (4ubu.pdb1.gz) 247 Kb

Biological Unit Coordinates (4ubu.pdb2.gz) 246 Kb

Biological Unit Coordinates (4ubu.pdb3.gz) 244 Kb

Biological Unit Coordinates (4ubu.pdb4.gz) 247 Kb

Biological Unit Coordinates (4ubu.pdb5.gz) 250 Kb

LPC: Ligand-Protein Contacts for 4UBU

CSU: Contacts of Structural Units for 4UBU

Structure Factors (3848 Kb)

Retrieve 4UBU in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4UBU from S2C, [Save to disk]

Re-refined 4ubu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4UBU in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ubu] [4ubu_A] [4ubu_B] [4ubu_C] [4ubu_D] [4ubu_E] [4ubu_F] [4ubu_G] [4ubu_H]

SWISS-PROT database:

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