4UDD GR in complex with desisobutyrylciclesonide date
authors Edman, K., Hogner, A., Hussein, A., Bjursell, M., Aagaard, A., Backstrom, S., Bodin, C., Wissler, L., Jellesmark-Jensen, T., Cavallin, A., Karlsson, U., Nilsson, E., Lecina, D., Takahashi, R., Grebner, C., Lepisto, M., Guallar, V.
compound source
symmetry
R_factor
R_Free 0.2239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand CPS, CV7, EDO enzyme
Primary referenceLigand Binding Mechanism in Steroid Receptors: From Conserved Plasticity to Differential Evolutionary Constraints., Edman K, Hosseini A, Bjursell MK, Aagaard A, Wissler L, Gunnarsson A, Kaminski T, Kohler C, Backstrom S, Jensen TJ, Cavallin A, Karlsson U, Nilsson E, Lecina D, Takahashi R, Grebner C, Geschwindner S, Lepisto M, Hogner AC, Guallar V, Structure. 2015 Dec 1;23(12):2280-90. doi: 10.1016/j.str.2015.09.012. Epub 2015, Oct 22. PMID:26602186
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4udd.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4UDD
  • CSU: Contacts of Structural Units for 4UDD
  • Structure Factors (755 Kb)
  • Retrieve 4UDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UDD from S2C, [Save to disk]
  • Re-refined 4udd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UDD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4udd] [4udd_B] [4udd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UDD: [HOLI ] by SMART
    • Other resources with information on 4UDD
  • Community annotation for 4UDD at PDBWiki (http://pdbwiki.org)

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