4UDX CO2 bound to cluster C of Ni,Fe-CO dehydrogenase at true-atomic resolution date
authors Fesseler, J., Jeoung, J.H., Dobbek, H.
compound source
symmetry
R_factor
R_Free 0.1565
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.03
ligand CO2, FE2, FES, SF4, WCC enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceHow the [NiFe S ] Cluster of CO Dehydrogenase Activates CO and NCO, Fesseler J, Jeoung JH, Dobbek H, Angew Chem Int Ed Engl. 2015 Apr 29. doi: 10.1002/anie.201501778. PMID:25926100
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (326 Kb) [Save to disk]
  • Biological Unit Coordinates (4udx.pdb1.gz) 634 Kb
  • LPC: Ligand-Protein Contacts for 4UDX
  • CSU: Contacts of Structural Units for 4UDX
  • Structure Factors (2374 Kb)
  • Retrieve 4UDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UDX from S2C, [Save to disk]
  • Re-refined 4udx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UDX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UDX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4udx_X] [4udx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4UDX
  • Community annotation for 4UDX at PDBWiki (http://pdbwiki.org)

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