4UFQ Structure of a novel Hyaluronidase (Hyal_Sk) from Streptomyces koganeiensis. date
authors Gavira, J.A., Messina, L., Pernagallo, S., Unciti-Broceta, J.D., Conejero-Muriel, M., Diaz-Mochon, J.J., Vaccaro, S., Caruso, S., Musumeci, L., Bisicchia, S., Pasquale, R.Di.
compound source
symmetry
R_factor
R_Free 0.1743
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand CL, GOL, MSE, NA, PEG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceIdentification and characterization of a bacterial hyaluronidase and its production in recombinant form., Messina L, Gavira JA, Pernagallo S, Unciti-Broceta JD, Sanchez Martin RM, Diaz-Mochon JJ, Vaccaro S, Conejero-Muriel M, Pineda-Molina E, Caruso S, Musumeci L, Di Pasquale R, Pontillo A, Sincinelli F, Pavan M, Secchieri C, FEBS Lett. 2016 Jun 17. doi: 10.1002/1873-3468.12258. PMID:27311405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (4ufq.pdb1.gz) 304 Kb
  • Biological Unit Coordinates (4ufq.pdb2.gz) 321 Kb
  • LPC: Ligand-Protein Contacts for 4UFQ
  • CSU: Contacts of Structural Units for 4UFQ
  • Structure Factors (4029 Kb)
  • Retrieve 4UFQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UFQ from S2C, [Save to disk]
  • Re-refined 4ufq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UFQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UFQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ufq] [4ufq_B] [4ufq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4UFQ
  • Community annotation for 4UFQ at PDBWiki (http://pdbwiki.org)

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