4UM1 Engineered Ls-AChBP with alpha4-alpha4 binding pocket in complex with NS3573 date
authors Shahsavar, A., Kastrup, J.S., Balle, T., Gajhede, M.
compound source
symmetry
R_factor
R_Free 0.2307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.83
ligand 09P, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceAChBP Engineered to Mimic the alpha4-beta4 Binding Pocket in alpha4beta2 Nicotinic Acetylcholine Receptors Reveals Interface Specific Interactions Important for Binding and Activity., Shahsavar A, Ahring PK, Olsen JA, Krintel C, Kastrup JS, Balle T, Gajhede M, Mol Pharmacol. 2015 Jul 15. pii: mol.115.098061. PMID:26180047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (4um1.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 4UM1
  • CSU: Contacts of Structural Units for 4UM1
  • Structure Factors (1656 Kb)
  • Retrieve 4UM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UM1 from S2C, [Save to disk]
  • Re-refined 4um1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4UM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4um1] [4um1_D] [4um1_E] [4um1_A] [4um1_B] [4um1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4UM1
  • Community annotation for 4UM1 at PDBWiki (http://pdbwiki.org)

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