4UPV Low X-ray dose structure of a Ni-A Ni-Sox mixture of the D. fructosovorans NiFe-hydrogenase L122A mutant date
authors Volbeda, A., Martin, L., Barbier, E., Gutierrez-Sanz, O., DeLacey, A.L., Liebgott, P.P., Dementin, S., Rousset, M., Fontecilla-Camps, J.C.
compound source
symmetry
R_factor
R_Free 0.15390
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.52
ligand CL, CSS, CSX, F3S, FCO, GLY, GOL, H2S, MG, NI, SF4, SOT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Q, R


Primary referenceCrystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states., Volbeda A, Martin L, Barbier E, Gutierrez-Sanz O, De Lacey AL, Liebgott PP, Dementin S, Rousset M, Fontecilla-Camps JC, J Biol Inorg Chem. 2014 Oct 15. PMID:25315838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (580 Kb) [Save to disk]
  • Biological Unit Coordinates (4upv.pdb1.gz) 291 Kb
  • Biological Unit Coordinates (4upv.pdb2.gz) 286 Kb
  • LPC: Ligand-Protein Contacts for 4UPV
  • CSU: Contacts of Structural Units for 4UPV
  • Structure Factors (2987 Kb)
  • Retrieve 4UPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UPV from S2C, [Save to disk]
    • View 4UPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UPV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4upv] [4upv_A] [4upv_Q] [4upv_R] [4upv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4UPV
  • Community annotation for 4UPV at PDBWiki (http://pdbwiki.org)

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