4URD Cryo-EM map of Trigger Factor bound to a translating ribosome date
authors Deeng, J., Chan, K.Y., Sluis, E.van.der., Bischoff, L., Berninghausen, O., Han, W., Gumbart, J., Schulten, K., Beatrix, B., Beckmann, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.70
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDynamic Behavior of Trigger Factor on the Ribosome., Deeng J, Chan KY, van der Sluis EO, Berninghausen O, Han W, Gumbart J, Schulten K, Beatrix B, Beckmann R, J Mol Biol. 2016 Jun 16. pii: S0022-2836(16)30215-7. doi:, 10.1016/j.jmb.2016.06.007. PMID:27320387
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (4urd.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 4URD
  • Retrieve 4URD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4URD from S2C, [Save to disk]
  • View 4URD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4URD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4urd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4urd_A] [4urd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4URD
  • Community annotation for 4URD at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science