4USC Crystal structure of peroxidase from palm tree Chamaerops excelsa date
authors Bernardes, A., Santos, J.C., Textor, L.C., Cuadrado, N.H., Kostetsky, E.Y., Roig, M.G., Muniz, J.R.C., Shnyrov, V.L., Polikarpov, I.
compound source
symmetry
R_factor
R_Free 0.24585
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand CA, EDO, FUC, HEM, MAN, NAG, PEG, PEO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


    • Primary referenceCrystal structure analysis of peroxidase from the palm tree Chamaerops excelsa., Bernardes A, Textor LC, Santos JC, Cuadrado NH, Kostetsky EY, Roig MG, Bavro VN, Muniz JR, Shnyrov VL, Polikarpov I, Biochimie. 2015 Apr;111:58-69. doi: 10.1016/j.biochi.2015.01.014. Epub 2015 Feb, 7. PMID:25660651
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4usc.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 4USC
  • CSU: Contacts of Structural Units for 4USC
  • Structure Factors (466 Kb)
  • Retrieve 4USC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4USC from S2C, [Save to disk]
  • Re-refined 4usc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4USC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4USC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4USC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4usc_A] [4usc] [4usc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4USC
  • Community annotation for 4USC at PDBWiki (http://pdbwiki.org)

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