4UX8 RET recognition of GDNF-GFRalpha1 ligand by a composite binding site promotes membrane-proximal self-association date
authors Goodman, K., Kjaer, S., Beuron, F., Knowles, P., Nawrotek, A., Burns, E., Purkiss, A., George, R., Santoro, M., Morris, E.P., McDonald, N.Q.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 24.00
ligand CA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, E


F, D


Primary referenceRET Recognition of GDNF-GFRalpha1 Ligand by a Composite Binding Site Promotes Membrane-Proximal Self-Association., Goodman KM, Kjaer S, Beuron F, Knowles PP, Nawrotek A, Burns EM, Purkiss AG, George R, Santoro M, Morris EP, McDonald NQ, Cell Rep. 2014 Sep 25;8(6):1894-904. doi: 10.1016/j.celrep.2014.08.040. Epub 2014, Sep 18. PMID:25242331
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (4ux8.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 4UX8
  • CSU: Contacts of Structural Units for 4UX8
  • Retrieve 4UX8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UX8 from S2C, [Save to disk]
    • View 4UX8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UX8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UX8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ux8_A] [4ux8_E] [4ux8_F] [4ux8_D] [4ux8_B] [4ux8_C] [4ux8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UX8: [GDNF] [TGFB ] by SMART
    • Other resources with information on 4UX8
  • Community annotation for 4UX8 at PDBWiki (http://pdbwiki.org)

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