4UY1 Novel pyrazole series of group X Secretory Phospholipase A2 (sPLA2-X) inhibitors date
authors Sandmark, J., Oster, L., Hallberg, K., Bodin, C., Chen, H.
compound source
symmetry
R_factor
R_Free 0.22958
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 1PE, CA, DMS, PEG, TJM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of lipid...

  • Primary referenceDiscovery of a novel pyrazole series of group X secreted phospholipase A2 inhibitor (sPLAX) via fragment based virtual screening., Chen H, Knerr L, Kerud T, Hallberg K, Oster L, Rohman M, Osterlund K, Beisel HG, Olsson T, Brengdhal J, Sandmark J, Bodin C, Bioorg Med Chem Lett. 2014 Sep 30. pii: S0960-894X(14)01011-7. doi:, 10.1016/j.bmcl.2014.09.058. PMID:25316315
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4uy1.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4uy1.pdb2.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 4UY1
  • CSU: Contacts of Structural Units for 4UY1
  • Structure Factors (233 Kb)
  • Retrieve 4UY1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UY1 from S2C, [Save to disk]
  • Re-refined 4uy1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UY1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UY1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UY1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uy1] [4uy1_A] [4uy1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4UY1: [PA2c ] by SMART
  • Other resources with information on 4UY1
  • Community annotation for 4UY1 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science