4V10 Skelemin Association with alpha2b,beta3 Integrin: A Structural Model date
authors Gorbatyuk, V., Deshmukh, L., Nguyen, K., Vinogradova, O.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceSkelemin Association with AlphaIIbBeta3 Integrin: A Structural Model., Gorbatyuk V, Nguyen K, Podolnikova NP, Deshmukh L, Lin X, Ugarova TP, Vinogradova O, Biochemistry. 2014 Sep 15. PMID:25224262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1278 Kb) [Save to disk]
  • Biological Unit Coordinates (4v10.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 4V10
  • Original NMR restraints for 4V10 from PDB
  • Retrieve 4V10 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V10 from S2C, [Save to disk]
    • View 4V10 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V10
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4V10, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v10_A] [4v10]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V10: [IG] [IG_like ] by SMART
    • Other resources with information on 4V10
  • Community annotation for 4V10 at PDBWiki (http://pdbwiki.org)

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