4W5A Complex structure of ATRX ADD bound to H3K9me3S10ph peptide date
authors Zhao, D., Xiang, B., Li, H.
compound source
symmetry
R_factor
R_Free 0.2597
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.60
ligand M3L, SEP, ZN enzyme
Primary referenceATRX tolerates activity-dependent histone H3 methyl/phos switching to maintain repetitive element silencing in neurons., Noh KM, Maze I, Zhao D, Xiang B, Wenderski W, Lewis PW, Shen L, Li H, Allis CD, Proc Natl Acad Sci U S A. 2014 Dec 23. pii: 201411258. PMID:25538301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (4w5a.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (4w5a.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (4w5a.pdb3.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 4W5A
  • CSU: Contacts of Structural Units for 4W5A
  • Structure Factors (212 Kb)
  • Retrieve 4W5A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W5A from S2C, [Save to disk]
  • Re-refined 4w5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4W5A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4W5A
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4W5A, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w5a_E] [4w5a] [4w5a_B] [4w5a_F] [4w5a_D] [4w5a_A] [4w5a_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4W5A: [RING ] by SMART
    • Other resources with information on 4W5A
  • Community annotation for 4W5A at PDBWiki (http://pdbwiki.org)

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