4W72 Crystal Structure of Full-Length Split GFP Mutant E115C/T118H Disulfide Dimer With Copper Mediated Crystal Contacts, P 21 21 21, Form 1 date
authors Leibly, D.J., Waldo, G.S., Yeates, T.O.
compound source
symmetry
R_factor
R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CRO, CU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Suite of Engineered GFP Molecules for Oligomeric Scaffolding., Leibly DJ, Arbing MA, Pashkov I, DeVore N, Waldo GS, Terwilliger TC, Yeates TO, Structure. 2015 Sep 1;23(9):1754-68. doi: 10.1016/j.str.2015.07.008. Epub 2015, Aug 13. PMID:26278175
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (4w72.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 4W72
  • CSU: Contacts of Structural Units for 4W72
  • Structure Factors (596 Kb)
  • Retrieve 4W72 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4W72 from S2C, [Save to disk]
  • Re-refined 4w72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4W72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4W72
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4W72, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4w72_A] [4w72] [4w72_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4W72
  • Community annotation for 4W72 at PDBWiki (http://pdbwiki.org)

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