4WA9 The crystal structure of human abl1 wild type kinase domain in complex with axitinib date
authors Johnson, E., McTigue, M., Cronin, C.N.
compound source
symmetry
R_factor
R_Free 0.2123
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand AXI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAxitinib effectively inhibits BCR-ABL1(T315I) with a distinct binding conformation., Pemovska T, Johnson E, Kontro M, Repasky GA, Chen J, Wells P, Cronin CN, McTigue M, Kallioniemi O, Porkka K, Murray BW, Wennerberg K, Nature. 2015 Feb 9. doi: 10.1038/nature14119. PMID:25686603
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk]
  • Biological Unit Coordinates (4wa9.pdb1.gz) 95 Kb
  • Biological Unit Coordinates (4wa9.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4WA9
  • CSU: Contacts of Structural Units for 4WA9
  • Structure Factors (695 Kb)
  • Retrieve 4WA9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WA9 from S2C, [Save to disk]
  • Re-refined 4wa9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WA9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WA9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WA9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wa9_B] [4wa9] [4wa9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WA9: [TyrKc ] by SMART
    • Other resources with information on 4WA9
  • Community annotation for 4WA9 at PDBWiki (http://pdbwiki.org)

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