4WFA The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid date
authors Eyal, Z., Matzov, D., Krupkin, M., Wekselman, I., Zimmerman, E., Rozenberg, H., Bashan, A., Yonath, A.E.
compound source
symmetry
R_factor
R_Free 0.2428
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.39
ligand EOH, EPE, MG, MN, MPD, NA, SPD, ZLD enzyme
Gene
Ontology
ChainFunctionProcessComponent
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4


A


B


C


D


E


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


W


Z


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3383 Kb) [Save to disk]
  • Biological Unit Coordinates (4wfa.pdb1.gz) 3351 Kb
  • LPC: Ligand-Protein Contacts for 4WFA
  • CSU: Contacts of Structural Units for 4WFA
  • Structure Factors (2752 Kb)
  • Retrieve 4WFA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WFA from S2C, [Save to disk]
  • Re-refined 4wfa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WFA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WFA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wfa_A] [4wfa_Z] [4wfa_3] [4wfa_U] [4wfa_V] [4wfa_M] [4wfa_J] [4wfa_C] [4wfa_Y] [4wfa_D] [4wfa_P] [4wfa_G] [4wfa_R] [4wfa_S] [4wfa_O] [4wfa_E] [4wfa_I] [4wfa_B] [4wfa_X] [4wfa] [4wfa_2] [4wfa_H] [4wfa_W] [4wfa_Q] [4wfa_K] [4wfa_T] [4wfa_N] [4wfa_L] [4wfa_4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WFA: [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 4WFA
  • Community annotation for 4WFA at PDBWiki (http://pdbwiki.org)

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