4WLC Structure of dextran glucosidase with glucose date
authors Kobayashi, M., Kato, K., Yao, M.
compound source
symmetry
R_factor
R_Free 0.2628
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand BGC, CA, GOL enzyme
Gene SMU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase., Kobayashi M, Saburi W, Nakatsuka D, Hondoh H, Kato K, Okuyama M, Mori H, Kimura A, Yao M, FEBS Lett. 2015 Feb 13;589(4):484-9. doi: 10.1016/j.febslet.2015.01.005. Epub, 2015 Jan 14. PMID:25595454
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4wlc.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 4WLC
  • CSU: Contacts of Structural Units for 4WLC
  • Structure Factors (409 Kb)
  • Retrieve 4WLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WLC from S2C, [Save to disk]
  • Re-refined 4wlc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WLC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wlc_A] [4wlc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WLC: [Aamy ] by SMART
    • Other resources with information on 4WLC
  • Community annotation for 4WLC at PDBWiki (http://pdbwiki.org)

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