4WPF Crystal structure of RORc in complex with a phenyl sulfonamide agonist date
authors Kiefer, J.R., Wallweber, H.A., Boenig, G.de.Leon., Hymowitz, S.G.
compound source
symmetry
R_factor
R_Free 0.2271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 3SN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


Primary referenceMinor Structural Change to Tertiary Sulfonamide RORc Ligands Led to Opposite Mechanisms of Action., Rene O, Fauber BP, Boenig Gde L, Burton B, Eidenschenk C, Everett C, Gobbi A, Hymowitz SG, Johnson AR, Kiefer JR, Liimatta M, Lockey P, Norman M, Ouyang W, Wallweber HA, Wong H, ACS Med Chem Lett. 2014 Dec 4;6(3):276-81. doi: 10.1021/ml500420y. eCollection, 2015 Mar 12. PMID:25815138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (4wpf.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (4wpf.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4WPF
  • CSU: Contacts of Structural Units for 4WPF
  • Structure Factors (515 Kb)
  • Retrieve 4WPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WPF from S2C, [Save to disk]
  • Re-refined 4wpf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WPF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WPF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wpf_D] [4wpf_A] [4wpf] [4wpf_B] [4wpf_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WPF: [HOLI ] by SMART
    • Other resources with information on 4WPF
  • Community annotation for 4WPF at PDBWiki (http://pdbwiki.org)

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