4WPL Crystal structure of Mycobacterium tuberculosis uracil-DNA glycosylase in complex with uracil, Form I date
authors Arif, S.M., Geethanandan, K., Mishra, P., Surolia, A., Varshney, U., Vijayan, M.
compound source
symmetry
R_factor
R_Free 0.12354
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.15
ligand ACT, CL, DMS, GOL, URA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural plasticity in Mycobacterium tuberculosis uracil-DNA glycosylase (MtUng) and its functional implications., Arif SM, Geethanandan K, Mishra P, Surolia A, Varshney U, Vijayan M, Acta Crystallogr D Biol Crystallogr. 2015 Jul 1;71(Pt 7):1514-27. doi:, 10.1107/S1399004715009311. Epub 2015 Jun 30. PMID:26143923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (4wpl.pdb1.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4WPL
  • CSU: Contacts of Structural Units for 4WPL
  • Structure Factors (3602 Kb)
  • Retrieve 4WPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WPL from S2C, [Save to disk]
  • Re-refined 4wpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WPL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wpl_A] [4wpl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4WPL: [UDG] [UreE_C ] by SMART
    • Other resources with information on 4WPL
  • Community annotation for 4WPL at PDBWiki (http://pdbwiki.org)

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