4WRI Crystal structure of okadaic acid binding protein 2.1 date
authors Ehara, H., Makino, M., Kodama, K., Ito, T., Sekine, S., Fukuzawa, S., Yokoyama, S., Tachibana, K.
compound source
symmetry
R_factor
R_Free 0.2050
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand MLY, OKA enzyme
Primary referenceCrystal Structure of Okadaic Acid Binding Protein 2.1: A Sponge Protein Implicated in Cytotoxin Accumulation., Ehara H, Makino M, Kodama K, Konoki K, Ito T, Sekine SI, Fukuzawa S, Yokoyama S, Tachibana K, Chembiochem. 2015 May 12. doi: 10.1002/cbic.201500141. PMID:25965326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (4wri.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 4WRI
  • CSU: Contacts of Structural Units for 4WRI
  • Structure Factors (642 Kb)
  • Retrieve 4WRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WRI from S2C, [Save to disk]
  • Re-refined 4wri structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WRI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WRI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wri_A] [4wri]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4WRI
  • Community annotation for 4WRI at PDBWiki (http://pdbwiki.org)

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