4WVP Crystal structure of an activity-based probe HNE complex date
authors Lechtenberg, B.C., Kasperkiewicz, P., Robinson, H.R., Drag, M., Riedl, S.J.
compound source
symmetry
R_factor
R_Free 0.1689
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.63
ligand 3V2, 3V3, BMA, BTN, EDO, FUC, NAG, NLB, OIC, OMT, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceThe Elastase-PK101 Structure: Mechanism of an Ultrasensitive Activity-based Probe Revealed., Lechtenberg BC, Kasperkiewicz P, Robinson H, Drag M, Riedl SJ, ACS Chem Biol. 2015 Jan 22. PMID:25581168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (4wvp.pdb1.gz) 74 Kb
  • Biological Unit Coordinates (4wvp.pdb2.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 4WVP
  • CSU: Contacts of Structural Units for 4WVP
  • Structure Factors (1513 Kb)
  • Retrieve 4WVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WVP from S2C, [Save to disk]
  • Re-refined 4wvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WVP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4WVP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wvp_E] [4wvp_I] [4wvp]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WVP: [Tryp_SPc ] by SMART
    • Other resources with information on 4WVP
  • Community annotation for 4WVP at PDBWiki (http://pdbwiki.org)

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