4WYZ The crystal structure of the A109G mutant of RNase A in complex with 3'UMP date
authors French, R.L., Gagne, D., Doucet, N., Simonovic, M.
compound source
symmetry
R_factor
R_Free 0.1705
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.45
ligand U3P enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referencePerturbation of the Conformational Dynamics of an Active-Site Loop Alters Enzyme Activity., Gagne D, French RL, Narayanan C, Simonovic M, Agarwal PK, Doucet N, Structure. 2015 Dec 1;23(12):2256-66. doi: 10.1016/j.str.2015.10.011. Epub 2015, Nov 19. PMID:26655472
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4wyz.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (4wyz.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 4WYZ
  • CSU: Contacts of Structural Units for 4WYZ
  • Structure Factors (399 Kb)
  • Retrieve 4WYZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WYZ from S2C, [Save to disk]
  • Re-refined 4wyz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4WYZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4WYZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wyz] [4wyz_A] [4wyz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WYZ: [RNAse_Pc ] by SMART
    • Other resources with information on 4WYZ
  • Community annotation for 4WYZ at PDBWiki (http://pdbwiki.org)

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