4X2L Crystal structure of human BACE-1 bound to Compound 6 date
authors Vajdos, F.F., Parris, K.
compound source
symmetry
R_factor
R_Free 0.2385
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand 3WP, DMS, GOL, IOD, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a Series of Efficient, Centrally Efficacious BACE1 Inhibitors through Structure-Based Drug Design., Butler CR, Brodney MA, Beck EM, Barreiro G, Nolan CE, Pan F, Vajdos FF, Parris K, Varghese AH, Helal CJ, Lira R, Doran SD, Riddell D, Buzon LM, Dutra JK, Martinez-Alsina LA, Ogilvie K, Murray JC, Young JM, Atchison K, Robshaw A, Gonzales C, Wang J, Zhang Y, O'Neill BT, J Med Chem. 2015 Feb 19. PMID:25695670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (4x2l.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4X2L
  • CSU: Contacts of Structural Units for 4X2L
  • Structure Factors (446 Kb)
  • Retrieve 4X2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X2L from S2C, [Save to disk]
  • Re-refined 4x2l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X2L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X2L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x2l_A] [4x2l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4X2L
  • Community annotation for 4X2L at PDBWiki (http://pdbwiki.org)

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