4X48 Crystal structure of GluR2 ligand-binding core date
authors Pandit, J.
compound source
symmetry
R_factor
R_Free 0.1972
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand GLU, XPF, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThe Discovery and Characterization of the alpha-Amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) Receptor Potentiator N-{(3S,4S)-4-[4-(5-cyano-2-thienyl)phenoxy]tetrahydrofuran-3-yl}propane-2-sulfona mide (PF-04958242)., Shaffer CL, Patel NC, Schwarz JB, Scialis RJ, Wei Y, Hou XJ, Xie L, Karki K, Bryce D, Osgood SM, Hoffmann WE, Lazzaro JT, Chang C, McGinnis DF, Lotarski SM, Liu J, Obach R, Weber ML, Chen LM, Zasadny KR, Seymour PA, Schmidt C, Hajos M, Hurst RS, Pandit J, O'Donnell CJ, J Med Chem. 2015 Apr 23. PMID:25905800
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (4x48.pdb1.gz) 178 Kb
  • Biological Unit Coordinates (4x48.pdb2.gz) 180 Kb
  • LPC: Ligand-Protein Contacts for 4X48
  • CSU: Contacts of Structural Units for 4X48
  • Structure Factors (3255 Kb)
  • Retrieve 4X48 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X48 from S2C, [Save to disk]
  • Re-refined 4x48 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4X48 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4X48
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X48, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x48_A] [4x48] [4x48_C] [4x48_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4X48: [Lig_chan-Glu_bd] [PBPb] [PBPe ] by SMART
    • Other resources with information on 4X48
  • Community annotation for 4X48 at PDBWiki (http://pdbwiki.org)

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