4X60 Crystal structure of PRMT5:MEP50 with EPZ015666 and sinefungin date
authors Boriack-Sjodin, P.A.
compound source
symmetry
R_factor
R_Free 0.2537
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand 3XV, GOL, SFG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription corepressor ac...
  • protein-arginine omega-N sym...


  • B
  • ligand-dependent nuclear rec...


  • Primary referenceA selective inhibitor of PRMT5 with in vivo and in vitro potency in MCL models., Chan-Penebre E, Kuplast KG, Majer CR, Boriack-Sjodin PA, Wigle TJ, Johnston LD, Rioux N, Munchhof MJ, Jin L, Jacques SL, West KA, Lingaraj T, Stickland K, Ribich SA, Raimondi A, Scott MP, Waters NJ, Pollock RM, Smith JJ, Barbash O, Pappalardi M, Ho TF, Nurse K, Oza KP, Gallagher KT, Kruger R, Moyer MP, Copeland RA, Chesworth R, Duncan KW, Nat Chem Biol. 2015 Apr 27. doi: 10.1038/nchembio.1810. PMID:25915199
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk]
  • Biological Unit Coordinates (4x60.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 4X60
  • CSU: Contacts of Structural Units for 4X60
  • Structure Factors (977 Kb)
  • Retrieve 4X60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X60 from S2C, [Save to disk]
  • Re-refined 4x60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X60
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X60, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x60_B] [4x60_A] [4x60]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X60: [WD40 ] by SMART
  • Other resources with information on 4X60
  • Community annotation for 4X60 at PDBWiki (http://pdbwiki.org)

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