4X6O FACTOR XIA IN COMPLEX WITH THE INHIBITOR methyl (4-{4-chloro-2-[(1S)-1-({3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]propanoyl}amino)-2-phenylethyl]-1H-imidazol-5-yl}phenyl)carbamate date
authors Wei, A.
compound source
symmetry
R_factor
R_Free 0.2277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand 3Y4, EDO, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based design of inhibitors of coagulation factor XIa with novel P1 moieties., Pinto DJ, Smallheer JM, Corte JR, Austin EJ, Wang C, Fang T, Smith LM 2nd, Rossi KA, Rendina AR, Bozarth JM, Zhang G, Wei A, Ramamurthy V, Sheriff S, Myers JE Jr, Morin PE, Luettgen JM, Seiffert DA, Quan ML, Wexler RR, Bioorg Med Chem Lett. 2015 Feb 4. pii: S0960-894X(15)00040-2. doi:, 10.1016/j.bmcl.2015.01.028. PMID:25728130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4x6o.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4X6O
  • CSU: Contacts of Structural Units for 4X6O
  • Structure Factors (229 Kb)
  • Retrieve 4X6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X6O from S2C, [Save to disk]
  • Re-refined 4x6o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X6O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X6O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x6o] [4x6o_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X6O: [Tryp_SPc ] by SMART
  • Other resources with information on 4X6O
  • Community annotation for 4X6O at PDBWiki (http://pdbwiki.org)

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