4X6P FACTOR XIA (PICHIA PASTORIS; C500S [C122S]) IN COMPLEX WITH THE INHIBITOR (2E)-N-{(1S)-1-[4-(3-amino-1H-indazol-6-yl)-1H-imidazol-2-yl]-2-phenylethyl}-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enamide date
authors Sheriff, S.
compound source
symmetry
R_factor
R_Free 0.1965
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.93
ligand 3YU, CIT, GOL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design of inhibitors of coagulation factor XIa with novel P1 moieties., Pinto DJ, Smallheer JM, Corte JR, Austin EJ, Wang C, Fang T, Smith LM 2nd, Rossi KA, Rendina AR, Bozarth JM, Zhang G, Wei A, Ramamurthy V, Sheriff S, Myers JE Jr, Morin PE, Luettgen JM, Seiffert DA, Quan ML, Wexler RR, Bioorg Med Chem Lett. 2015 Feb 4. pii: S0960-894X(15)00040-2. doi:, 10.1016/j.bmcl.2015.01.028. PMID:25728130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (4x6p.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (4x6p.pdb2.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 4X6P
  • CSU: Contacts of Structural Units for 4X6P
  • Structure Factors (2103 Kb)
  • Retrieve 4X6P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4X6P from S2C, [Save to disk]
  • Re-refined 4x6p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4X6P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4X6P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4X6P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4x6p_B] [4x6p] [4x6p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4X6P: [Tryp_SPc ] by SMART
  • Other resources with information on 4X6P
  • Community annotation for 4X6P at PDBWiki (http://pdbwiki.org)

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