OCA Atlas for 4X8F

4X8F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene

VC0395 ; VC395

Gene
Ontology

Chain	Function	Process	Component
O, E, B, M, F, A, N, C, I, L, G, P, J, H, D, K

Primary reference

Crystal Structure of Apo and Ligand Bound Vibrio cholerae Ribokinase (Vc-RK): Role of Monovalent Cation Induced Activation and Structural Flexibility in Sugar Phosphorylation., Paul R, Patra MD, Sen U, Adv Exp Med Biol. 2015;842:293-307. doi: 10.1007/978-3-319-11280-0_19. PMID:25408351

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1520 Kb) [Save to disk]

Biological Unit Coordinates (4x8f.pdb1.gz) 198 Kb

Biological Unit Coordinates (4x8f.pdb2.gz) 196 Kb

Biological Unit Coordinates (4x8f.pdb3.gz) 196 Kb

Biological Unit Coordinates (4x8f.pdb4.gz) 198 Kb

Biological Unit Coordinates (4x8f.pdb5.gz) 197 Kb

Biological Unit Coordinates (4x8f.pdb6.gz) 197 Kb

Biological Unit Coordinates (4x8f.pdb7.gz) 196 Kb

Biological Unit Coordinates (4x8f.pdb8.gz) 197 Kb

CSU: Contacts of Structural Units for 4X8F

Structure Factors (5575 Kb)

Retrieve 4X8F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4X8F from S2C, [Save to disk]

Re-refined 4x8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4X8F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4x8f] [4x8f_A] [4x8f_B] [4x8f_C] [4x8f_D] [4x8f_E] [4x8f_F] [4x8f_G] [4x8f_H] [4x8f_I] [4x8f_J] [4x8f_K] [4x8f_L] [4x8f_M] [4x8f_N] [4x8f_O] [4x8f_P]

SWISS-PROT database:

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