4XA7 Soluble part of holo NqrC from V. harveyi date
authors Borshchevskiy, V., Round, E., Bertsova, Y., Polovinkin, V., Gushchin, I., Mishin, A., Kovalev, K., Kachalova, G., Popov, A., Bogachev, A., Gordeliy, V.
compound source
symmetry
R_factor
R_Free 0.2222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand CL, FMN enzyme
Gene MUQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Functional Investigation of Flavin Binding Center of the NqrC Subunit of Sodium-Translocating NADH:Quinone Oxidoreductase from Vibrio harveyi., Borshchevskiy V, Round E, Bertsova Y, Polovinkin V, Gushchin I, Ishchenko A, Kovalev K, Mishin A, Kachalova G, Popov A, Bogachev A, Gordeliy V, PLoS One. 2015 Mar 3;10(3):e0118548. doi: 10.1371/journal.pone.0118548., eCollection 2015. PMID:25734798
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (4xa7.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4XA7
  • CSU: Contacts of Structural Units for 4XA7
  • Structure Factors (463 Kb)
  • Retrieve 4XA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XA7 from S2C, [Save to disk]
  • Re-refined 4xa7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XA7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XA7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xa7] [4xa7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XA7: [FMN_bind ] by SMART
    • Other resources with information on 4XA7
  • Community annotation for 4XA7 at PDBWiki (http://pdbwiki.org)

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