4XAT Crystal structure of the olfactomedin domain from noelin/pancortin/olfactomedin-1 date
authors Hill, S.E., Nguyen, E., Lieberman, R.L.
compound source
symmetry
R_factor
R_Free 0.2043
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.11
ligand CA, GOL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies., Hill SE, Donegan RK, Nguyen E, Desai TM, Lieberman RL, PLoS One. 2015 Jun 29;10(6):e0130888. doi: 10.1371/journal.pone.0130888., eCollection 2015. PMID:26121352
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4xat.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 4XAT
  • CSU: Contacts of Structural Units for 4XAT
  • Structure Factors (234 Kb)
  • Retrieve 4XAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XAT from S2C, [Save to disk]
  • Re-refined 4xat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XAT
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4xat from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xat_A] [4xat]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XAT: [OLF ] by SMART
  • Other resources with information on 4XAT
  • Community annotation for 4XAT at PDBWiki (http://pdbwiki.org)

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