OCA Atlas for 4XBG

4XBG

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

44E, GOL, PO4, UNL

enzyme

Primary reference

Crystallographic Identification of Lipid as an Integral Component of the Epitope of HIV Broadly Neutralizing Antibody 4E10., Irimia A, Sarkar A, Stanfield RL, Wilson IA, Immunity. 2016 Jan 19;44(1):21-31. doi: 10.1016/j.immuni.2015.12.001. Epub 2016, Jan 5. PMID:26777395

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]

Biological Unit Coordinates (4xbg.pdb1.gz) 76 Kb

Biological Unit Coordinates (4xbg.pdb2.gz) 77 Kb

Biological Unit Coordinates (4xbg.pdb3.gz) 74 Kb

Biological Unit Coordinates (4xbg.pdb4.gz) 72 Kb

Biological Unit Coordinates (4xbg.pdb5.gz) 72 Kb

Biological Unit Coordinates (4xbg.pdb6.gz) 70 Kb

LPC: Ligand-Protein Contacts for 4XBG

CSU: Contacts of Structural Units for 4XBG

Structure Factors (839 Kb)

Retrieve 4XBG in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4XBG from S2C, [Save to disk]

Re-refined 4xbg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XBG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xbg] [4xbg_A] [4xbg_B] [4xbg_C] [4xbg_D] [4xbg_E] [4xbg_F] [4xbg_G] [4xbg_H] [4xbg_I] [4xbg_J] [4xbg_K] [4xbg_L]

SWISS-PROT database:

Domains found in 4XBG: [IG_like] [IGv ] by SMART

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