4XGY GFP based antibody (fluorobody) date
authors Shi, N., Chen, Y.G., Wang, S.H.
compound source
symmetry
R_factor
R_Free 0.1665
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.49
ligand CRO, PE5 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of a GFP-based antibody (fluorobody) to TLH, a toxin from Vibrio parahaemolyticus., Chen Y, Huang X, Wang R, Wang S, Shi N, Acta Crystallogr F Struct Biol Commun. 2015 Jul;71(Pt 7):913-8. doi:, 10.1107/S2053230X15008845. Epub 2015 Jun 27. PMID:26144238
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (4xgy.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 4XGY
  • CSU: Contacts of Structural Units for 4XGY
  • Structure Factors (712 Kb)
  • Retrieve 4XGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XGY from S2C, [Save to disk]
  • Re-refined 4xgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xgy] [4xgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4XGY
  • Community annotation for 4XGY at PDBWiki (http://pdbwiki.org)

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