OCA Atlas for 4XHR

4XHR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A, B	phosphatidic acid transporte...
M, N

Primary reference

Structural basis of intramitochondrial phosphatidic acid transport mediated by Ups1-Mdm35 complex., Yu F, He F, Yao H, Wang C, Wang J, Li J, Qi X, Xue H, Ding J, Zhang P, EMBO Rep. 2015 Jun 12. pii: e201540137. PMID:26071601

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]

Biological Unit Coordinates (4xhr.pdb1.gz) 82 Kb

Biological Unit Coordinates (4xhr.pdb2.gz) 83 Kb

CSU: Contacts of Structural Units for 4XHR

Structure Factors (140 Kb)

Retrieve 4XHR in mmCIF format [Save to disk]

Re-refined 4xhr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XHR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4XHR

Cartoon representation from PDB Cartoon

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Crystal Contacts, from CryCo at Weizmann Institute

Fold representative 4xhr from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xhr] [4xhr_A] [4xhr_B] [4xhr_M] [4xhr_N]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 4XHR

Community annotation for 4XHR at PDBWiki (http://pdbwiki.org)

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