4XIB Crystal structure of the MZM-REP domains of Mind bomb 1 in complex with fly Delta N-box peptide date
authors McMillan, B.J., Blacklow, S.C.
compound source
symmetry
R_factor
R_Free 0.2444
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA tail of two sites: a bipartite mechanism for recognition of notch ligands by mind bomb e3 ligases., McMillan BJ, Schnute B, Ohlenhard N, Zimmerman B, Miles L, Beglova N, Klein T, Blacklow SC, Mol Cell. 2015 Mar 5;57(5):912-24. doi: 10.1016/j.molcel.2015.01.019. PMID:25747658
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (4xib.pdb1.gz) 177 Kb
  • LPC: Ligand-Protein Contacts for 4XIB
  • CSU: Contacts of Structural Units for 4XIB
  • Structure Factors (451 Kb)
  • Retrieve 4XIB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XIB from S2C, [Save to disk]
  • Re-refined 4xib structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XIB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XIB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XIB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xib] [4xib_C] [4xib_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XIB: [ZnF_ZZ ] by SMART
    • Other resources with information on 4XIB
  • Community annotation for 4XIB at PDBWiki (http://pdbwiki.org)

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