OCA Atlas for 4XLR

4XLR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, I
G, H, A, B
J, D
K, E
L, F

Primary reference

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex., Bae B, Chen J, Davis E, Leon K, Darst SA, Campbell EA, Elife. 2015 Sep 8;4. doi: 10.7554/eLife.08505. PMID:26349034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1209 Kb) [Save to disk]

Biological Unit Coordinates (4xlr.pdb1.gz) 613 Kb

Biological Unit Coordinates (4xlr.pdb2.gz) 602 Kb

LPC: Ligand-Protein Contacts for 4XLR

CSU: Contacts of Structural Units for 4XLR

Structure Factors (2738 Kb)

Retrieve 4XLR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4XLR from S2C, [Save to disk]

Re-refined 4xlr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XLR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xlr] [4xlr_A] [4xlr_B] [4xlr_C] [4xlr_D] [4xlr_E] [4xlr_F] [4xlr_G] [4xlr_H] [4xlr_I] [4xlr_J] [4xlr_K] [4xlr_L] [4xlr_M] [4xlr_N] [4xlr_O] [4xlr_P] [4xlr_Q] [4xlr_R] [4xlr_S] [4xlr_T]

SWISS-PROT database:

Domains found in 4XLR: [CarD_TRCF] [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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