4XLS Crystal structure of T. aquaticus transcription initiation complex with CarD containing upstream fork promoter. date
authors Bae, B., Darst, S.A.
compound source
symmetry
R_factor
R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 4.01
ligand MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B, H, G


C, I


F, L


J, D


K, E


Primary referenceCarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex., Bae B, Chen J, Davis E, Leon K, Darst SA, Campbell EA, Elife. 2015 Sep 8;4. doi: 10.7554/eLife.08505. PMID:26349034
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1220 Kb) [Save to disk]
  • Biological Unit Coordinates (4xls.pdb1.gz) 623 Kb
  • Biological Unit Coordinates (4xls.pdb2.gz) 604 Kb
  • Biological Unit Coordinates (4xls.pdb3.gz) 598 Kb
  • Biological Unit Coordinates (4xls.pdb4.gz) 578 Kb
  • LPC: Ligand-Protein Contacts for 4XLS
  • CSU: Contacts of Structural Units for 4XLS
  • Structure Factors (5765 Kb)
  • Retrieve 4XLS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XLS from S2C, [Save to disk]
  • Re-refined 4xls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4XLS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4XLS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xls_D] [4xls_S] [4xls_A] [4xls_H] [4xls_N] [4xls_L] [4xls_C] [4xls_O] [4xls_F] [4xls_K] [4xls_E] [4xls_P] [4xls_G] [4xls_I] [4xls_J] [4xls_B] [4xls_R] [4xls_M] [4xls]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XLS: [CarD_TRCF] [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
    • Other resources with information on 4XLS
  • Community annotation for 4XLS at PDBWiki (http://pdbwiki.org)

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