OCA Atlas for 4XLS

4XLS

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, G, A, H
D, J
E, K
I, C
L, F

Primary reference

CarD uses a minor groove wedge mechanism to stabilize the RNA polymerase open promoter complex., Bae B, Chen J, Davis E, Leon K, Darst SA, Campbell EA, Elife. 2015 Sep 8;4. doi: 10.7554/eLife.08505. PMID:26349034

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1199 Kb) [Save to disk]

Biological Unit Coordinates (4xls.pdb1.gz) 611 Kb

Biological Unit Coordinates (4xls.pdb2.gz) 593 Kb

Biological Unit Coordinates (4xls.pdb3.gz) 586 Kb

Biological Unit Coordinates (4xls.pdb4.gz) 568 Kb

LPC: Ligand-Protein Contacts for 4XLS

CSU: Contacts of Structural Units for 4XLS

Structure Factors (5765 Kb)

Retrieve 4XLS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4XLS from S2C, [Save to disk]

Re-refined 4xls structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4XLS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4xls] [4xls_A] [4xls_B] [4xls_C] [4xls_D] [4xls_E] [4xls_F] [4xls_G] [4xls_H] [4xls_I] [4xls_J] [4xls_K] [4xls_L] [4xls_M] [4xls_N] [4xls_O] [4xls_P] [4xls_R] [4xls_S]

SWISS-PROT database:

Domains found in 4XLS: [CarD_TRCF] [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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