4XR5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, PEG, PGE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural investigation of the thymidine phosphorylase from Salmonella typhimurium in the unliganded state and its complexes with thymidine and uridine., Balaev VV, Lashkov AA, Gabdulkhakov AG, Dontsova MV, Seregina TA, Mironov AS, Betzel C, Mikhailov AM, Acta Crystallogr F Struct Biol Commun. 2016 Mar 1;72(Pt 3):224-33. doi:, 10.1107/S2053230X1600162X. Epub 2016 Feb 19. PMID:26919527
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (4xr5.pdb1.gz) 272 Kb
  • LPC: Ligand-Protein Contacts for 4XR5
  • CSU: Contacts of Structural Units for 4XR5
  • Structure Factors (490 Kb)
  • Retrieve 4XR5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XR5 from S2C, [Save to disk]
  • Re-refined 4xr5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XR5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xr5] [4xr5_A] [4xr5_B]
  • SWISS-PROT database:
  • Domain found in 4XR5: [PYNP_C ] by SMART

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