4XUJ Nucleosome core particle containing adducts from treatment with a thiomorpholine-substituted [(eta-6-p-cymene)Ru(3-hydroxy-2-pyridone)Cl] compound date
authors Adhireksan, Z., Davey, C.A.
compound source
symmetry
R_factor
R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.18
ligand 4A6, MG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (4xuj.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 4XUJ
  • CSU: Contacts of Structural Units for 4XUJ
  • Structure Factors (903 Kb)
  • Retrieve 4XUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XUJ from S2C, [Save to disk]
  • Re-refined 4xuj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XUJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4xuj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xuj_G] [4xuj_J] [4xuj] [4xuj_C] [4xuj_F] [4xuj_B] [4xuj_I] [4xuj_E] [4xuj_D] [4xuj_A] [4xuj_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4XUJ: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 4XUJ
  • Community annotation for 4XUJ at PDBWiki (http://pdbwiki.org)

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