4Y0F	Crystal Structure of Human TDP-43 RRM1 Domain in Complex with an Unmodified Single-stranded DNA	date
authors	Chiang, C.H., Kuo, P.H., Doudeva, L.G., Wang, Y.T., Yuan, H.S.
compound		source
symmetry		R_factor R_Free 0.2883
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.65
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation., Chiang CH, Grauffel C, Wu LS, Kuo PH, Doudeva LG, Lim C, Shen CK, Yuan HS, Sci Rep. 2016 Feb 17;6:21581. doi: 10.1038/srep21581. PMID:26883171

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (4y0f.pdb1.gz) 30 Kb Biological Unit Coordinates (4y0f.pdb2.gz) 27 Kb CSU: Contacts of Structural Units for 4Y0F Structure Factors (139 Kb) Retrieve 4Y0F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Y0F from S2C, [Save to disk] Re-refined 4y0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y0F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4Y0F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y0f_A] [4y0f_B] [4y0f_C] [4y0f] [4y0f_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4Y0F: [RRM ] by SMART

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Community annotation for 4Y0F at PDBWiki (http://pdbwiki.org)

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