4Y0L Mycobacterial membrane protein MmpL11D2 date
authors Torres, R., Chim, N., Goulding, C.W.
compound source
symmetry
R_factor
R_Free 0.2537
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand IOD, SO4 enzyme
Primary referenceThe Structure and Interactions of Periplasmic Domains of Crucial MmpL Membrane Proteins from Mycobacterium tuberculosis., Chim N, Torres R, Liu Y, Capri J, Batot G, Whitelegge JP, Goulding CW, Chem Biol. 2015 Aug 20;22(8):1098-107. doi: 10.1016/j.chembiol.2015.07.013. Epub , 2015 Aug 13. PMID:26278184
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (4y0l.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 4Y0L
  • CSU: Contacts of Structural Units for 4Y0L
  • Structure Factors (60 Kb)
  • Retrieve 4Y0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y0L from S2C, [Save to disk]
  • Re-refined 4y0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y0L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y0l_A] [4y0l]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y0L
  • Community annotation for 4Y0L at PDBWiki (http://pdbwiki.org)

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