4Y16 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 48G, FUL, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


Primary referenceLipid and carbohydrate modifications of alpha-galactosylceramide differently influence mouse and human type I natural killer T cell activation., Birkholz A, Nemcovic M, Yu ED, Girardi E, Wang J, Khurana A, Pauwels N, Farber E, Chitale S, Franck RW, Tsuji M, Howell A, Van Calenbergh S, Kronenberg M, Zajonc DM, J Biol Chem. 2015 May 27. pii: jbc.M115.654814. PMID:26018083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (4y16.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 4Y16
  • CSU: Contacts of Structural Units for 4Y16
  • Structure Factors (654 Kb)
  • Retrieve 4Y16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y16 from S2C, [Save to disk]
  • Re-refined 4y16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y16] [4y16_A] [4y16_B] [4y16_C] [4y16_D]
  • SWISS-PROT database:
  • Domains found in 4Y16: [IG] [IG_like] [IGc1] [IGv ] by SMART

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