OCA Atlas for 4Y19

4Y19

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

BMA, MAN, MLI, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B

Primary reference

T cell receptor reversed polarity recognition of a self-antigen major histocompatibility complex., Beringer DX, Kleijwegt FS, Wiede F, van der Slik AR, Loh KL, Petersen J, Dudek NL, Duinkerken G, Laban S, Joosten A, Vivian JP, Chen Z, Uldrich AP, Godfrey DI, McCluskey J, Price DA, Radford KJ, Purcell AW, Nikolic T, Reid HH, Tiganis T, Roep BO, Rossjohn J, Nat Immunol. 2015 Nov;16(11):1153-61. doi: 10.1038/ni.3271. Epub 2015 Oct 5. PMID:26437244

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (286 Kb) [Save to disk]

Biological Unit Coordinates (4y19.pdb1.gz) 279 Kb

LPC: Ligand-Protein Contacts for 4Y19

CSU: Contacts of Structural Units for 4Y19

Structure Factors (2697 Kb)

Retrieve 4Y19 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4Y19 from S2C, [Save to disk]

Re-refined 4y19 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y19 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y19] [4y19_A] [4y19_B] [4y19_C] [4y19_D] [4y19_E]

SWISS-PROT database:

Domains found in 4Y19: [IG] [IG_like] [IGc1] [MHC_II_alpha] [MHC_II_beta ] by SMART

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