4Y2S Structure of soluble epoxide hydrolase in complex with 1-[3-(trifluoromethyl)phenyl]-1H-pyrazol-4-ol date
authors Amano, Y., Yamaguchi, T.
compound source
symmetry
R_factor
R_Free 0.23319
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand 49P, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIdentification of N-ethylmethylamine as a novel scaffold for inhibitors of soluble epoxide hydrolase by crystallographic fragment screening., Amano Y, Tanabe E, Yamaguchi T, Bioorg Med Chem. 2015 May 15;23(10):2310-7. doi: 10.1016/j.bmc.2015.03.083. Epub , 2015 Apr 6. PMID:25862210
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (4y2s.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 4Y2S
  • CSU: Contacts of Structural Units for 4Y2S
  • Structure Factors (526 Kb)
  • Retrieve 4Y2S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y2S from S2C, [Save to disk]
  • Re-refined 4y2s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Y2S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Y2S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y2S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y2s_A] [4y2s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4Y2S
  • Community annotation for 4Y2S at PDBWiki (http://pdbwiki.org)

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