4Y4V		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CSO, DAL, GOL	enzyme
Gene	C694 ; HP
Gene Ontology	Chain Function Process Component A, B
Primary reference	The Cell-Shape Determining Csd6 Protein from Helicobacter pylori Constitutes a New Family of L,D-Carboxypeptidase., Kim HS, Im HN, An DR, Yoon JY, Jang JY, Mobashery S, Hesek D, Lee M, Yoo J, Cui M, Choi S, Kim C, Lee NK, Kim SJ, Kim JY, Bang G, Han BW, Lee BI, Yoon HJ, Suh SW, J Biol Chem. 2015 Aug 25. pii: jbc.M115.658781. PMID:26306031

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (4y4v.pdb1.gz) 111 Kb LPC: Ligand-Protein Contacts for 4Y4V CSU: Contacts of Structural Units for 4Y4V Structure Factors (866 Kb) Retrieve 4Y4V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4Y4V from S2C, [Save to disk] Re-refined 4y4v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4Y4V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4y4v] [4y4v_A] [4y4v_B] SWISS-PROT database:

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---