4Y5R date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 0AF, CA, HEC enzyme
Gene PDEN ; PDEN
Gene
Ontology
ChainFunctionProcessComponent
B, A
  • electron transfer activity


    • D, F


    E, C


    Primary referenceA T67A mutation in the proximal pocket of the high-spin heme of MauG stabilizes formation of a mixed-valent Fe(II)/Fe(III) state and enhances charge resonance stabilization of the bis-Fe(IV) state., Shin S, Feng M, Li C, Williamson HR, Choi M, Wilmot CM, Davidson VL, Biochim Biophys Acta. 2015 Aug;1847(8):709-16. doi: 10.1016/j.bbabio.2015.04.008., Epub 2015 Apr 17. PMID:25896561
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • Biological Unit Coordinates (4y5r.pdb1.gz) 532 Kb
  • LPC: Ligand-Protein Contacts for 4Y5R
  • CSU: Contacts of Structural Units for 4Y5R
  • Structure Factors (781 Kb)
  • Retrieve 4Y5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y5R from S2C, [Save to disk]
  • Re-refined 4y5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y5R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4Y5R, from MSDmotif at EBI
  • Fold representative 4y5r from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y5r] [4y5r_A] [4y5r_B] [4y5r_C] [4y5r_D] [4y5r_E] [4y5r_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4Y5R
  • Community annotation for 4Y5R at PDBWiki (http://pdbwiki.org)

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